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Formation: RNAseq de novo assembly

05/06/2018
Type d'événement ou fait marquant: 
Offre de formation

The Sigenae team organizes a training course for bio-informaticians and biologists aiming at introduce analysis of sequences. It focuses on de novo assembly (without reference genome) of reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing) and particularly Illumina platforms (HiSeq). You will use our RNA-Seq assembly pipeline called DRAP, learn how to assemble distinct samples, how to assemble multiple samples and how to assess the quality of your assemblies.

 

Training schedule:

This training is focused on practice. It consists of 4 modules with a large variety of exercises:

  •  Introduction (09:00 am to 10:00 am): introduction to de novo assembly and analysis of RNA-seq data.
  • The DRAP software (10:00 am to 12:00 pm): Pipeline description and runDrap usage.
  • The DRAP software (14:00 am to 16:00 pm): runMeta and runAssessment usage.
  •  Discussion (16:00 am to 17:00 pm): discussion about results and assembly quality

 

Registration: http://bioinfo.genotoul.fr/index.php/events/rnaseq-de-novo-assembly-2/

Centre Inra ou sera localisé l'annonce: